STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG59537.1Lipopolysaccharide-assembly. (179 aa)    
Predicted Functional Partners:
SFG59490.1
Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
     0.820
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
  
    0.795
SFG59511.1
Hypothetical protein.
 
    0.792
SFG59565.1
Transcriptional regulator.
       0.791
topA
DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
    0.769
SFH04753.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.756
SFH11670.1
Outer membrane protein assembly factor BamA.
  
     0.700
SFH05013.1
Protein of unknown function.
  
     0.685
SFG04587.1
Protein of unknown function.
  
     0.681
SFG13631.1
Putative porin.
  
    0.680
Your Current Organism:
Algoriphagus hitonicola
NCBI taxonomy Id: 435880
Other names: A. hitonicola, Algoriphagus hitonicola Copa-Patino et al. 2008 emend. Kim et al. 2014, CCM 7449, CECT 7267, DSM 19315, strain 7-UAH
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