STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG97994.1Uncharacterized protein YjbI, contains pentapeptide repeats. (267 aa)    
Predicted Functional Partners:
SFG98014.1
KAP family P-loop domain-containing protein.
       0.625
SFG67994.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
   
 0.617
SFG97973.1
T5orf172 domain-containing protein.
  
    0.608
SFG66232.1
LysM repeat-containing protein.
   
   0.599
SFG27427.1
Tetratricopeptide repeat-containing protein.
 
  
 0.598
SFG97956.1
Superfamily II DNA or RNA helicase.
  
    0.596
SFG34412.1
Topoisomerase-4 subunit B.
    
 
 0.551
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 
 0.551
SFG10835.1
Pentapeptide repeat-containing protein.
  
     0.438
SFG98031.1
Phage terminase small subunit.
       0.436
Your Current Organism:
Algoriphagus hitonicola
NCBI taxonomy Id: 435880
Other names: A. hitonicola, Algoriphagus hitonicola Copa-Patino et al. 2008 emend. Kim et al. 2014, CCM 7449, CECT 7267, DSM 19315, strain 7-UAH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.