STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN83313.1Tetratricopeptide repeat family protein. (407 aa)    
Predicted Functional Partners:
ALN83621.1
hemX family protein.
 
  
 0.837
ALN88975.1
tonB family C-terminal domain protein.
 
     0.738
ALN84132.1
Putative transmembrane protein.
  
     0.717
ALN87567.1
Type II secretion system (T2SS), M subtype b family protein.
  
     0.712
ALN84211.1
O-Antigen ligase family protein.
  
     0.709
ALN83628.1
Outer membrane beta-barrel domain protein.
  
     0.706
ALN87957.1
tonB family C-terminal domain protein.
 
     0.697
ALN87683.1
Putative exported lectin/glucanase.
  
     0.696
ALN84371.1
Hypothetical protein.
  
     0.694
ALN86835.1
Polyketide cyclase / dehydrase and lipid transport family protein.
  
     0.686
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.