Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALN83813.1 | ALN83814.1 | LC55x_0513 | LC55x_0514 | Hypothetical protein. | Saccharopine dehydrogenase family protein. | 0.483 |
ALN83813.1 | ALN83815.1 | LC55x_0513 | LC55x_0515 | Hypothetical protein. | Transglycosylase SLT domain protein. | 0.494 |
ALN83813.1 | cca | LC55x_0513 | LC55x_0512 | Hypothetical protein. | tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | 0.710 |
ALN83814.1 | ALN83813.1 | LC55x_0514 | LC55x_0513 | Saccharopine dehydrogenase family protein. | Hypothetical protein. | 0.483 |
ALN83814.1 | ALN83815.1 | LC55x_0514 | LC55x_0515 | Saccharopine dehydrogenase family protein. | Transglycosylase SLT domain protein. | 0.781 |
ALN83814.1 | ALN83816.1 | LC55x_0514 | LC55x_0516 | Saccharopine dehydrogenase family protein. | Hypothetical protein. | 0.563 |
ALN83814.1 | cca | LC55x_0514 | LC55x_0512 | Saccharopine dehydrogenase family protein. | tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | 0.441 |
ALN83815.1 | ALN83813.1 | LC55x_0515 | LC55x_0513 | Transglycosylase SLT domain protein. | Hypothetical protein. | 0.494 |
ALN83815.1 | ALN83814.1 | LC55x_0515 | LC55x_0514 | Transglycosylase SLT domain protein. | Saccharopine dehydrogenase family protein. | 0.781 |
ALN83815.1 | ALN83816.1 | LC55x_0515 | LC55x_0516 | Transglycosylase SLT domain protein. | Hypothetical protein. | 0.567 |
ALN83815.1 | ALN84211.1 | LC55x_0515 | LC55x_0914 | Transglycosylase SLT domain protein. | O-Antigen ligase family protein. | 0.548 |
ALN83815.1 | ALN84966.1 | LC55x_0515 | LC55x_1678 | Transglycosylase SLT domain protein. | traB family protein. | 0.473 |
ALN83815.1 | ALN86309.1 | LC55x_0515 | LC55x_3046 | Transglycosylase SLT domain protein. | lysM domain protein. | 0.516 |
ALN83815.1 | ALN88839.1 | LC55x_0515 | LC55x_5593 | Transglycosylase SLT domain protein. | traB family protein. | 0.457 |
ALN83815.1 | cca | LC55x_0515 | LC55x_0512 | Transglycosylase SLT domain protein. | tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | 0.712 |
ALN83815.1 | lptD | LC55x_0515 | LC55x_4092 | Transglycosylase SLT domain protein. | ostA-like family protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.459 |
ALN83815.1 | mrcB | LC55x_0515 | LC55x_4154 | Transglycosylase SLT domain protein. | Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | 0.519 |
ALN83816.1 | ALN83814.1 | LC55x_0516 | LC55x_0514 | Hypothetical protein. | Saccharopine dehydrogenase family protein. | 0.563 |
ALN83816.1 | ALN83815.1 | LC55x_0516 | LC55x_0515 | Hypothetical protein. | Transglycosylase SLT domain protein. | 0.567 |
ALN84211.1 | ALN83815.1 | LC55x_0914 | LC55x_0515 | O-Antigen ligase family protein. | Transglycosylase SLT domain protein. | 0.548 |
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