STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN84686.12OG-Fe(II) oxygenase superfamily protein. (228 aa)    
Predicted Functional Partners:
ALN84687.1
tonB-dependent siderophore receptor family protein; [P] COG4774 Outer membrane receptor for monomeric catechols.
 
  
 0.953
ALN84685.1
pepSY-associated TM helix family protein.
 
   
 0.843
ALN84684.1
Hypothetical protein.
 
     0.761
ALN84372.1
tonB-dependent siderophore receptor family protein; '[P] COG1629 Outer membrane receptor proteins, mostly Fe transport'.
 
  
 0.698
dhbB
Isochorismatase.
   
    0.638
ALN84681.1
Flavodoxin family protein.
 
     0.603
dltA
D-alanine--poly(phosphoribitol) ligase, subunit 1.
   
    0.591
ALN84683.1
Hypothetical protein.
 
     0.585
ALN87988.1
tonB-dependent siderophore receptor family protein.
 
  
 0.556
ALN83632.1
tonB-dependent siderophore receptor family protein.
 
  
 0.555
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.