STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN85244.1Hypothetical protein. (82 aa)    
Predicted Functional Partners:
ALN85245.1
Efflux transporter, RND family, MFP subunit; [V] COG1566 Multidrug resistance efflux pump.
       0.697
ALN85243.1
H+ antiporter-2 family protein; Belongs to the major facilitator superfamily.
       0.565
ALN85246.1
Efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
       0.493
ALN85242.1
Hypothetical protein.
       0.471
ALN85247.1
marR family protein.
       0.413
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.