Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ALN85290.1Acetyltransferase family protein. (313 aa)    
Predicted Functional Partners:
ALN88482.1
FMN-dependent dehydrogenase family protein.
     
 0.670
pheA
Chorismate mutase.
  
  
 0.598
ALN84729.1
Aspartate kinase domain protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.586
ALN88578.1
Sensory box protein.
  
  
 0.579
ALN85959.1
Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.571
ALN83926.1
FAD binding domain protein.
  
   0.552
dltA
D-alanine--poly(phosphoribitol) ligase, subunit 1.
  
  
 0.547
lexA
Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
     
 0.533
ALN85292.1
Hypothetical protein.
       0.523
ALN83364.1
NIPSNAP family protein.
  
    0.505
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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