STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN85503.1Diguanylate cyclase domain protein. (357 aa)    
Predicted Functional Partners:
ALN83488.1
Response regulator.
 
    0.952
ALN88577.1
EAL domain protein.
 
 0.948
ALN85504.1
Hypothetical protein.
       0.802
ALN85766.1
Response regulator.
 
  
 0.788
ALN88578.1
Sensory box protein.
 
 
 0.660
ALN86593.1
Diguanylate cyclase domain protein.
 
  
0.570
ALN84290.1
Diguanylate cyclase domain protein.
 
 
0.527
ALN88582.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
 
 0.526
ALN86478.1
Diguanylate cyclase domain protein.
 
0.521
ALN86306.1
Diguanylate cyclase domain protein; [T] COG2200 FOG: EAL domain.
 
 
0.518
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.