STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN85579.1Carbon-nitrogen hydrolase family protein. (295 aa)    
Predicted Functional Partners:
ALN83930.1
Porphyromonas-type peptidyl-arginine deiminase family protein; Belongs to the agmatine deiminase family.
 
 0.991
ALN85580.1
Hypothetical protein; [E] COG2957 Peptidylarginine deiminase and related enzymes; Belongs to the agmatine deiminase family.
  
 0.990
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.951
ALN87008.1
Spermidine n1-acetyltransferase.
     
  0.900
ALN85578.1
Acetyltransferase family protein.
       0.784
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
 
   
 0.728
ALN85581.1
Hypothetical protein.
       0.693
ALN85959.1
Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
   
 
 0.559
ALN85572.1
traB family protein.
       0.532
speD
S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily.
 
  
 0.502
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.