STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxRRedox-sensitive transcriptional activator SoxR; [K] COG0789 Predicted transcriptional regulators. (159 aa)    
Predicted Functional Partners:
ALN88578.1
Sensory box protein.
   
 
 0.601
ALN86353.1
Zinc-binding dehydrogenase family protein.
       0.553
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.495
ALN86351.1
Hypothetical protein.
       0.478
ALN87827.1
Response regulator.
   
 
 0.463
ALN88582.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
   
 
 0.460
ALN88397.1
His Kinase A domain protein.
   
 
 0.423
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.