ALN86471.1 protein (Lysobacter capsici) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALN86471.1

enoyl-CoA hydratase/isomerase family protein. (260 aa)

Predicted Functional Partners:

hmgCL

0.996

ALN86473.1

0.979

ALN86460.1

0.972

ALN85712.1

0.837

ALN86085.1

0.821

fadE7

0.786

ALN84975.1

0.783

ALN86454.1

0.779

ALN86882.1

0.770

ALN85959.1

0.738

Your Current Organism:

Lysobacter capsici

NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALN84975.1	ALN85959.1	LC55x_1687	LC55x_2694	acyl-CoA dehydrogenase, N-terminal domain protein.	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.714
ALN84975.1	ALN86460.1	LC55x_1687	LC55x_3197	acyl-CoA dehydrogenase, N-terminal domain protein.	Carboxyl transferase domain protein.	0.455
ALN84975.1	ALN86471.1	LC55x_1687	LC55x_3208	acyl-CoA dehydrogenase, N-terminal domain protein.	enoyl-CoA hydratase/isomerase family protein.	0.783
ALN85712.1	ALN85959.1	LC55x_2447	LC55x_2694	acyl-CoA dehydrogenase, N-terminal domain protein.	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.714
ALN85712.1	ALN86460.1	LC55x_2447	LC55x_3197	acyl-CoA dehydrogenase, N-terminal domain protein.	Carboxyl transferase domain protein.	0.503
ALN85712.1	ALN86471.1	LC55x_2447	LC55x_3208	acyl-CoA dehydrogenase, N-terminal domain protein.	enoyl-CoA hydratase/isomerase family protein.	0.837
ALN85959.1	ALN84975.1	LC55x_2694	LC55x_1687	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	acyl-CoA dehydrogenase, N-terminal domain protein.	0.714
ALN85959.1	ALN85712.1	LC55x_2694	LC55x_2447	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	acyl-CoA dehydrogenase, N-terminal domain protein.	0.714
ALN85959.1	ALN86085.1	LC55x_2694	LC55x_2820	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	acyl-CoA dehydrogenase, N-terminal domain protein.	0.714
ALN85959.1	ALN86454.1	LC55x_2694	LC55x_3191	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	acyl-CoA dehydrogenase, N-terminal domain protein.	0.714
ALN85959.1	ALN86460.1	LC55x_2694	LC55x_3197	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	Carboxyl transferase domain protein.	0.748
ALN85959.1	ALN86471.1	LC55x_2694	LC55x_3208	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	enoyl-CoA hydratase/isomerase family protein.	0.738
ALN85959.1	ALN86473.1	LC55x_2694	LC55x_3210	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	ATP-grasp domain protein.	0.722
ALN85959.1	ALN86882.1	LC55x_2694	LC55x_3625	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	acyl-CoA dehydrogenase, N-terminal domain protein; [I] COG1960 Acyl-CoA dehydrogenases.	0.714
ALN85959.1	fadE7	LC55x_2694	LC55x_2164	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	ACYL-CoA DEHYDROGENASE FADE7.	0.714
ALN85959.1	hmgCL	LC55x_2694	LC55x_3214	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	hydroxymethylglutaryl-CoA lyase.	0.617
ALN86085.1	ALN85959.1	LC55x_2820	LC55x_2694	acyl-CoA dehydrogenase, N-terminal domain protein.	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.714
ALN86085.1	ALN86471.1	LC55x_2820	LC55x_3208	acyl-CoA dehydrogenase, N-terminal domain protein.	enoyl-CoA hydratase/isomerase family protein.	0.821
ALN86454.1	ALN85959.1	LC55x_3191	LC55x_2694	acyl-CoA dehydrogenase, N-terminal domain protein.	Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.714
ALN86454.1	ALN86460.1	LC55x_3191	LC55x_3197	acyl-CoA dehydrogenase, N-terminal domain protein.	Carboxyl transferase domain protein.	0.973