STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN86695.1Peptidase Do family protein; Belongs to the peptidase S1C family. (555 aa)    
Predicted Functional Partners:
ALN86696.1
Anti sigma-E RseA, N-terminal domain protein.
  
 
 0.934
rpoE
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.824
ALN87770.1
HAD hydrolase, IA, variant 1 family protein.
 
 
 0.718
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
 
   
 0.679
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.618
ALN85959.1
Amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.616
rpoH
Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
 
  
 0.606
ALN88397.1
His Kinase A domain protein.
  
  
 0.589
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
     
 0.580
ALN86698.1
enoyl-CoA hydratase/isomerase family protein.
   
  0.521
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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