STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN87010.1Hypothetical protein. (284 aa)    
Predicted Functional Partners:
ALN86107.1
Hypothetical protein.
  
     0.758
ALN84071.1
Outer membrane beta-barrel domain protein.
  
     0.716
ALN84966.1
traB family protein.
  
     0.711
ALN88267.1
luxR-family transcriptional regulator.
  
     0.702
ALN84736.1
Hypothetical protein.
  
     0.698
ALN87695.1
SH3 domain protein.
  
     0.693
ALN88583.1
Outer membrane beta-barrel domain protein.
  
     0.666
ALN86998.1
Methyltransferase domain protein.
  
     0.644
ALN83897.1
Phosphate-selective porin O and P family protein.
  
     0.620
fabR
fabR transcriptional repressor FabR transcriptional dual regulator.
  
     0.612
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.