STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN87253.1Peptidase M20/M25/M40 family protein. (543 aa)    
Predicted Functional Partners:
ALN83678.1
Peptidase MA superfamily protein.
  
     0.558
ALN86645.1
Pectinacetylesterase family protein.
  
    0.549
ALN86154.1
Zinc metalloproteinase; Extracellular zinc metalloprotease.
    0.543
mep
peptidyl-Lys metalloendopeptidase.
  
     0.530
mep-2
peptidyl-Lys metalloendopeptidase domain protein.
  
     0.497
ALN88394.1
Trypsin-like peptidase domain protein.
 
    0.485
ALN84822.1
Alpha/beta hydrolase fold family protein; Belongs to the type-B carboxylesterase/lipase family.
  
 0.451
ALN88495.1
igA Peptidase M64 family protein.
  
     0.430
ALN83670.1
Putative zinc protease; Belongs to the peptidase M16 family.
  
     0.412
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.