STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN87864.1ftsX-like permease family protein; '[V] COG0577 ABC-type antimicrobial peptide transport system, permease component'. (388 aa)    
Predicted Functional Partners:
ALN87863.1
ABC transporter family protein.
 
 0.977
ALN87862.1
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
   0.932
ALN87865.1
ftsX-like permease family protein.
 
   
0.907
ALN84092.1
ftsX-like permease family protein.
  
     0.725
ALN84094.1
ABC transporter family protein.
 
 0.725
ALN84093.1
ftsX-like permease family protein.
  
     0.708
lolD
Liporeleasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 0.692
ALN87365.1
ABC transporter family protein.
 
 0.685
ALN85548.1
ABC transporter family protein.
 
 0.636
ALN83423.1
ABC transporter family protein.
 
 0.625
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.