STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN88014.14-hydroxyproline epimerase; Belongs to the proline racemase family. (312 aa)    
Predicted Functional Partners:
ALN88013.1
FAD binding domain protein; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.996
ALN88011.1
FAD binding domain protein.
 
  
 0.992
ALN88012.1
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
  0.991
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.918
ALN88010.1
Dihydrodipicolinate synthetase family protein; Belongs to the DapA family.
 
  
 0.900
ALN88009.1
Aldehyde dehydrogenase family protein.
 
 
 
 0.881
ALN86973.1
NAD(P)-binding Rossmann-like domain protein; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
   
 0.724
ALN88015.1
Bacterial regulatory helix-turn-helix, AraC family protein.
 
     0.716
ALN88008.1
Metallopeptidase M24 family protein.
 
     0.672
ALN88016.1
Leucine Rich repeats family protein.
 
     0.590
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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