Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALN88040.1Tetratricopeptide repeat family protein. (898 aa)    
Predicted Functional Partners:
ALN88039.1
RNA polymerase sigma factor, TIGR02999 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.920
ALN86752.1
Protein serin-threonin phosphatase.
 
 
 0.814
ALN85353.1
RNA polymerase sigma factor, TIGR02999 family protein.
 
 
   0.714
ALN83385.1
RNA polymerase sigma factor, TIGR02999 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.705
ALN87645.1
RNA polymerase sigma factor, TIGR02999 family protein; Belongs to the sigma-70 factor family.
  
 
   0.693
ALN88417.1
RNA polymerase sigma factor, TIGR02999 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.682
ALN84980.1
FHA domain protein.
 
 
   0.550
ALN88038.1
Acyltransferase family protein.
       0.437
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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