STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN88099.1Carbohydrate binding module family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (576 aa)    
Predicted Functional Partners:
exoP
Exo-1,3/1,4-beta-glucanase.
 
  
 0.924
exoP-2
Exo-1,3/1,4-beta-glucanase; [G] COG1472 Beta-glucosidase-related glycosidases.
 
  
 0.922
ALN86198.1
Beta-galactosidase.
    
 0.918
celA1
Endoglucanase 1; Belongs to the glycosyl hydrolase family 6.
  
 
 0.911
glk-2
Glucokinase; Belongs to the bacterial glucokinase family.
 
     0.808
ALN88098.1
Tryptophan halogenase family protein.
       0.773
ALN88097.1
Cupin-like domain protein.
       0.770
ALN88096.1
sapC family protein.
       0.768
bglA
Beta-glucanase.
   
 0.581
bglA-2
Beta-glucanase.
 
   
 0.510
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.