STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN88464.1Hypothetical protein. (251 aa)    
Predicted Functional Partners:
ALN88463.1
Hypothetical protein.
       0.557
tdk
Thymidine kinase family protein.
       0.507
ALN83474.1
ATPase associated with various cellular activities family protein.
   
 0.461
ALN85031.1
ATPase associated with various cellular activities family protein; Belongs to the AAA ATPase family.
   
 0.461
ALN85855.1
ATPase associated with various cellular activities family protein.
   
 0.461
ALN88462.1
uvrD/REP helicase N-terminal domain protein; [L] COG0210 Superfamily I DNA and RNA helicases.
       0.443
Your Current Organism:
Lysobacter capsici
NCBI taxonomy Id: 435897
Other names: DSM 19286, KCTC 22007, L. capsici, Lysobacter capsici Park et al. 2008, Lysobacter sp. YC5194, strain YC5194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.