Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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Databases
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[Homology]
Score
IDSA_00345Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family. (116 aa)    
Predicted Functional Partners:
IDSA_00340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.846
IDSA_00335
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.825
IDSA_00350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.771
IDSA_06540
Among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.748
rsmI
Hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.621
IDSA_07405
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.566
IDSA_05430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.402
IDSA_08420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.402
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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