STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IDSA_02420Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)    
Predicted Functional Partners:
IDSA_02415
Invasion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.878
IDSA_02410
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.858
IDSA_03955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
IDSA_00600
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.669
IDSA_02425
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.668
IDSA_00720
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.667
IDSA_00620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.648
IDSA_10785
Phosphate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
IDSA_01375
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.570
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase; Catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the KdsA family.
       0.570
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.