Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IDSA_02685Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)    
Predicted Functional Partners:
rnd
Hypothetical protein; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.
 
     0.905
IDSA_02690
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.835
IDSA_02675
Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.787
IDSA_02665
Starvation-inducible protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.647
hflD
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.635
IDSA_02670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.626
IDSA_03105
LOG family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
IDSA_02655
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
IDSA_02660
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
rnt
Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
  
     0.473
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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