Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
IDSA_03640Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)    
Predicted Functional Partners:
IDSA_05430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.884
IDSA_08420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.884
IDSA_09235
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.841
IDSA_09240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.822
IDSA_09250
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.820
IDSA_09245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.817
IDSA_00485
General secretion pathway protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.769
IDSA_00090
MSHA biogenesis protein MshE; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.730
IDSA_00965
General secretion pathway protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
    
   0.730
IDSA_01860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.730
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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