Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
IDSA_04425Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)    
Predicted Functional Partners:
IDSA_09295
Structural protein MipA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
IDSA_04790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
IDSA_01265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.651
IDSA_05315
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.625
IDSA_10770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
IDSA_09430
Ribonucleoside-triphosphate reductase activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.595
IDSA_03925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.571
IDSA_09425
Ribonucleoside-triphosphate reductase; Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.569
IDSA_00505
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
IDSA_01670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.540
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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