Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IDSA_04470Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)    
Predicted Functional Partners:
IDSA_04465
Zinc-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.615
IDSA_04460
23S rRNA methyltransferase; SAM-dependent;catalyzes the methylation of cytosine at position 1962 of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.615
IDSA_01530
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.586
IDSA_03880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.583
IDSA_04655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.563
IDSA_04495
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
 
     0.560
IDSA_02295
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.554
IDSA_10555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.554
IDSA_10560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.554
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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