| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| IDSA_06200 | greB | IDSA_06200 | IDSA_06235 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.594 |
| IDSA_06230 | IDSA_06240 | IDSA_06230 | IDSA_06240 | Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.714 |
| IDSA_06230 | IDSA_06245 | IDSA_06230 | IDSA_06245 | Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.481 |
| IDSA_06230 | greB | IDSA_06230 | IDSA_06235 | Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.714 |
| IDSA_06240 | IDSA_06230 | IDSA_06240 | IDSA_06230 | Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.714 |
| IDSA_06240 | IDSA_06245 | IDSA_06240 | IDSA_06245 | Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.540 |
| IDSA_06240 | greB | IDSA_06240 | IDSA_06235 | Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.773 |
| IDSA_06245 | IDSA_06230 | IDSA_06245 | IDSA_06230 | Transcription accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.481 |
| IDSA_06245 | IDSA_06240 | IDSA_06245 | IDSA_06240 | Transcription accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.540 |
| IDSA_06245 | greB | IDSA_06245 | IDSA_06235 | Transcription accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.658 |
| IDSA_06245 | rpoA | IDSA_06245 | IDSA_11605 | Transcription accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.851 |
| IDSA_06245 | rpoB | IDSA_06245 | IDSA_05875 | Transcription accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.842 |
| IDSA_06245 | rpoZ | IDSA_06245 | IDSA_08745 | Transcription accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.824 |
| dksA | greB | IDSA_09805 | IDSA_06235 | RNA polymerase-binding transcription factor; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.689 |
| dksA | rpoA | IDSA_09805 | IDSA_11605 | RNA polymerase-binding transcription factor; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.855 |
| dksA | rpoB | IDSA_09805 | IDSA_05875 | RNA polymerase-binding transcription factor; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.920 |
| dksA | rpoC | IDSA_09805 | IDSA_05880 | RNA polymerase-binding transcription factor; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.853 |
| dksA | rpoZ | IDSA_09805 | IDSA_08745 | RNA polymerase-binding transcription factor; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.936 |
| greB | IDSA_06200 | IDSA_06235 | IDSA_06200 | Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.594 |
| greB | IDSA_06230 | IDSA_06235 | IDSA_06230 | Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.714 |
