STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IDSA_08050Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)    
Predicted Functional Partners:
IDSA_00720
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.995
IDSA_10280
Sodium:proline symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.909
IDSA_01270
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.908
IDSA_04180
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.770
IDSA_09470
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.767
IDSA_06590
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.681
IDSA_00045
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.664
IDSA_08995
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.630
IDSA_08805
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.601
IDSA_08420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.447
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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