STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IDSA_08075Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa)    
Predicted Functional Partners:
IDSA_08060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.830
IDSA_08065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.746
IDSA_08120
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
IDSA_08080
4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.515
IDSA_08070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
IDSA_05745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.492
IDSA_09955
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.478
IDSA_10370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.468
srkA
Serine/threonine protein kinase; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
       0.430
IDSA_08090
Disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.400
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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