STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IDSA_08075Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa)    
Predicted Functional Partners:
IDSA_08060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.766
IDSA_08065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.741
IDSA_05745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.728
IDSA_08120
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
IDSA_08080
4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.515
IDSA_08070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.511
IDSA_10370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.496
IDSA_09955
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.461
IDSA_06350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.459
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.459
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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