STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IDSA_080804Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)    
Predicted Functional Partners:
IDSA_03825
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.983
IDSA_03815
Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.982
IDSA_03830
Cbb3-type cytochrome c oxidase subunit I; CcoN; FixN; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.953
IDSA_09415
Coproporphyrinogen III oxidase; Catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.786
IDSA_03795
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.783
IDSA_03800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.771
IDSA_03810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.758
srkA
Serine/threonine protein kinase; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
       0.722
IDSA_03805
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.712
IDSA_08090
Disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.701
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.