Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
IDSA_08520Penicillin acylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (837 aa)    
Predicted Functional Partners:
IDSA_08545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0176 family.
     
 0.599
IDSA_04185
acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.559
IDSA_08515
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.545
IDSA_04520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.508
IDSA_05110
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
IDSA_08525
peptidyl-tRNA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.487
IDSA_04035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.411
IDSA_11420
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.409
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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