Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
IDSA_10070Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)    
Predicted Functional Partners:
IDSA_03050
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.683
IDSA_10075
Antitoxin; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.482
IDSA_10080
Toxin of toxin-antitoxin system; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.482
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.463
IDSA_10065
Peptidase S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
IDSA_10060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.430
IDSA_08430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.428
IDSA_01040
UDP-glucose 6-dehydrogenase; Catalyzes the formation of UDP-glucuronate from UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.414
IDSA_01095
UDP-4-dehydro-6-deoxy-2-acetamido-D-glucose 4-reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.414
IDSA_09910
Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.401
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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