Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IDSA_11385ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)    
Predicted Functional Partners:
IDSA_11390
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.971
IDSA_11380
Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.943
IDSA_11395
RND transporter MFP subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.936
lolD
Hypothetical protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
  
  0.693
IDSA_10925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
IDSA_01205
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.639
IDSA_09735
Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.639
IDSA_03560
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
IDSA_01190
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
IDSA_06110
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
Your Current Organism:
Idiomarina salinarum
NCBI taxonomy Id: 435908
Other names: CCUG 54359, I. salinarum, Idiomarina salinarum Yoon et al. 2007, KCTC 12971, Pseudidiomarina salinarum, Pseudidiomarina salinarum (Yoon et al. 2007) Jean et al. 2009, strain ISL-52
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