A0A166ATT1 protein (Fibularhizoctonia sp. CBS109695)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A166ATT1

S-adenosyl-L-methionine-dependent methyltransferase. (275 aa)

Predicted Functional Partners:

A0A166F5S0

0.787

A0A166U5D0

0.763

A0A166WVX3

0.760

A0A166DWZ3

0.758

A0A166V0M4

0.758

RPS1

0.758

A0A166BWU6

0.725

A0A166FJU1

0.719

A0A166FJX6

0.719

A0A166GMC1

0.719

Your Current Organism:

Fibularhizoctonia sp. CBS109695

NCBI taxonomy Id: 436010
Other names: F. sp. CBS 109695, Fibularhizoctonia sp. CBS 109695, Fibulorhizoctonia sp. CBS 109695

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A166ATT1	A0A166BWU6	A0A166ATT1	A0A166BWU6	S-adenosyl-L-methionine-dependent methyltransferase.	Bystin-domain-containing protein.	0.725
A0A166ATT1	A0A166DWZ3	A0A166ATT1	A0A166DWZ3	S-adenosyl-L-methionine-dependent methyltransferase.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.758
A0A166ATT1	A0A166F5S0	A0A166ATT1	A0A166F5S0	S-adenosyl-L-methionine-dependent methyltransferase.	Trm112p-domain-containing protein.	0.787
A0A166ATT1	A0A166FJU1	A0A166ATT1	A0A166FJU1	S-adenosyl-L-methionine-dependent methyltransferase.	Ribosomal protein S5 domain 2-like protein; Belongs to the universal ribosomal protein uS5 family.	0.719
A0A166ATT1	A0A166FJX6	A0A166ATT1	A0A166FJX6	S-adenosyl-L-methionine-dependent methyltransferase.	Ribosomal protein S5 domain 2-like protein; Belongs to the universal ribosomal protein uS5 family.	0.719
A0A166ATT1	A0A166GMC1	A0A166ATT1	A0A166GMC1	S-adenosyl-L-methionine-dependent methyltransferase.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.719
A0A166ATT1	A0A166U5D0	A0A166ATT1	A0A166U5D0	S-adenosyl-L-methionine-dependent methyltransferase.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.763
A0A166ATT1	A0A166V0M4	A0A166ATT1	A0A166V0M4	S-adenosyl-L-methionine-dependent methyltransferase.	40S ribosomal protein S27.	0.758
A0A166ATT1	A0A166WVX3	A0A166ATT1	A0A166WVX3	S-adenosyl-L-methionine-dependent methyltransferase.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.760
A0A166ATT1	RPS1	A0A166ATT1	A0A166VMZ7	S-adenosyl-L-methionine-dependent methyltransferase.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.758
A0A166BWU6	A0A166ATT1	A0A166BWU6	A0A166ATT1	Bystin-domain-containing protein.	S-adenosyl-L-methionine-dependent methyltransferase.	0.725
A0A166BWU6	A0A166DWZ3	A0A166BWU6	A0A166DWZ3	Bystin-domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.998
A0A166BWU6	A0A166F5S0	A0A166BWU6	A0A166F5S0	Bystin-domain-containing protein.	Trm112p-domain-containing protein.	0.934
A0A166BWU6	A0A166FJU1	A0A166BWU6	A0A166FJU1	Bystin-domain-containing protein.	Ribosomal protein S5 domain 2-like protein; Belongs to the universal ribosomal protein uS5 family.	0.970
A0A166BWU6	A0A166FJX6	A0A166BWU6	A0A166FJX6	Bystin-domain-containing protein.	Ribosomal protein S5 domain 2-like protein; Belongs to the universal ribosomal protein uS5 family.	0.970
A0A166BWU6	A0A166GMC1	A0A166BWU6	A0A166GMC1	Bystin-domain-containing protein.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
A0A166BWU6	A0A166U5D0	A0A166BWU6	A0A166U5D0	Bystin-domain-containing protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.952
A0A166BWU6	A0A166V0M4	A0A166BWU6	A0A166V0M4	Bystin-domain-containing protein.	40S ribosomal protein S27.	0.983
A0A166BWU6	A0A166WVX3	A0A166BWU6	A0A166WVX3	Bystin-domain-containing protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.985
A0A166BWU6	RPS1	A0A166BWU6	A0A166VMZ7	Bystin-domain-containing protein.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.987

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

22

average node degree:

4

avg. local clustering coefficient:

0.83

expected number of edges:

15

PPI enrichment p-value:

0.0417

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 114

1.55

3.35

2.24e-14

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

9 of 55

1.78

4.0

1.47e-12

GO:0019843

rRNA binding

7 of 42

1.78

3.3

2.02e-09

GO:0003723

RNA binding

8 of 121

1.38

2.08

2.56e-08

GO:0000049

tRNA binding

4 of 28

1.72

1.74

0.00013

GO:0003676

Nucleic acid binding

9 of 504

0.81

0.76

5.43e-05

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

9 of 63

1.72

3.82

8.73e-13

GO:0015935

Small ribosomal subunit

3 of 6

2.26

2.33

3.03e-05

GO:0005622

Intracellular anatomical structure

11 of 1355

0.47

0.41

0.00014

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:23342046

(2013) The genome sequences of Cellulomonas fimi and Cellvibrio gilvus reveal the cellulolytic strategies of two facultative anaerobes, transfer of Cellvibrio gilvus to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov.

3 of 32

1.53

0.95

0.0091

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:162

Ribosome

9 of 43

1.88

4.66

9.85e-14

CL:166

rRNA-binding

7 of 28

1.96

4.23

3.68e-11

CL:169

rRNA-binding

5 of 15

2.08

3.46

3.66e-08

CL:133

Translation, and Protein export

11 of 136

1.47

2.97

9.85e-14

CL:173

mRNA binding, and rRNA-binding

3 of 6

2.26

2.21

5.49e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

sde03010

Ribosome

9 of 53

1.79

4.26

1.58e-13

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 52

1.69

2.92

9.28e-09

GOCC:0022626

Cytosolic ribosome

5 of 29

1.8

2.55

1.03e-06

GOCC:0044391

Ribosomal subunit

5 of 33

1.74

2.44

1.23e-06

GOCC:0022627

Cytosolic small ribosomal subunit

3 of 13

1.92

1.77

0.00024

GOCC:0043229

Intracellular organelle

9 of 280

1.07

1.29

3.19e-07

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

9 of 55

1.78

4.11

4.44e-13

KW-0699

rRNA-binding

7 of 39

1.82

3.57

3.82e-10

KW-0820

tRNA-binding

3 of 19

1.76

1.43

0.0010

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About