A0A166T2Y2 protein (Fibularhizoctonia sp. CBS109695)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A166T2Y2

VHS domain-containing protein. (669 aa)

Predicted Functional Partners:

A0A166X028

0.822

A0A166S3B3

0.802

A0A166CND8

0.782

A0A166JP86

0.765

A0A166PZZ8

0.729

A0A166JCF6

0.700

A0A166A6V8

0.676

A0A166M1K1

0.658

A0A166X5U2

0.658

A0A166VJE5

0.648

Your Current Organism:

Fibularhizoctonia sp. CBS109695

NCBI taxonomy Id: 436010
Other names: F. sp. CBS 109695, Fibularhizoctonia sp. CBS 109695, Fibulorhizoctonia sp. CBS 109695

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A166A6V8	A0A166CND8	CPSF_A domain-containing protein.	RNA polymerase II-associated protein.	0.804
A0A166A6V8	A0A166JP86	CPSF_A domain-containing protein.	Uncharacterized protein.	0.835
A0A166A6V8	A0A166M1K1	CPSF_A domain-containing protein.	Uncharacterized protein.	0.778
A0A166A6V8	A0A166PZZ8	CPSF_A domain-containing protein.	Leo1-domain-containing protein.	0.898
A0A166A6V8	A0A166T2Y2	CPSF_A domain-containing protein.	VHS domain-containing protein.	0.676
A0A166A6V8	A0A166VJE5	CPSF_A domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
A0A166A6V8	A0A166X5U2	CPSF_A domain-containing protein.	RNA polymerase II-associated protein.	0.860
A0A166CND8	A0A166A6V8	RNA polymerase II-associated protein.	CPSF_A domain-containing protein.	0.804
A0A166CND8	A0A166JP86	RNA polymerase II-associated protein.	Uncharacterized protein.	0.999
A0A166CND8	A0A166M1K1	RNA polymerase II-associated protein.	Uncharacterized protein.	0.986
A0A166CND8	A0A166PZZ8	RNA polymerase II-associated protein.	Leo1-domain-containing protein.	0.999
A0A166CND8	A0A166T2Y2	RNA polymerase II-associated protein.	VHS domain-containing protein.	0.782
A0A166CND8	A0A166VJE5	RNA polymerase II-associated protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.719
A0A166CND8	A0A166X5U2	RNA polymerase II-associated protein.	RNA polymerase II-associated protein.	0.999
A0A166JCF6	A0A166T2Y2	Cytochrome-c from the OXPHOS pathway; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	VHS domain-containing protein.	0.700
A0A166JP86	A0A166A6V8	Uncharacterized protein.	CPSF_A domain-containing protein.	0.835
A0A166JP86	A0A166CND8	Uncharacterized protein.	RNA polymerase II-associated protein.	0.999
A0A166JP86	A0A166M1K1	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A166JP86	A0A166PZZ8	Uncharacterized protein.	Leo1-domain-containing protein.	0.999
A0A166JP86	A0A166T2Y2	Uncharacterized protein.	VHS domain-containing protein.	0.765