STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0107PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: pfu:PF0167 metalloprotease. (398 aa)    
Predicted Functional Partners:
Nmar_0108
PFAM: CutA1 divalent ion tolerance protein; KEGG: pho:PH0992 102aa long hypothetical protein.
       0.639
Nmar_0445
Hypothetical protein; KEGG: tva:TVAG_193760 DNA-directed RNA polymerase, omega subunit family protein Pfam: DUF683 TBPIP bZIP_1 Tektin HalX PspA_IM30 Tup_N GBP_C Vicilin_N priB_priC DMPK_coil PLU-1 DUF812 Cortex-I_coil HALZ LMP UVR ATG16 Prefoldin_2 Syntaxin-6_N Myosin_tail_1 Spectrin Tropomyosin DUF904 SpoOE-like Rab5-bind Filament DUF593 HSBP1 TPR_MLP1_2 Nnf1 PROSITE: GLU_RICH LYS_RICH.
 
    0.637
Nmar_1398
KEGG: syn:slr1056 hypothetical protein.
  
     0.617
uppS
Undecaprenyl diphosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
  
  
 0.617
Nmar_1212
PFAM: metallophosphoesterase; KEGG: mth:MTH541 Rad32 related protein.
 
     0.538
Nmar_0986
PFAM: TPR repeat-containing protein; peptidase M10A and M12B matrixin and adamalysin; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A2255 hypothetical protein.
 
     0.537
Nmar_1213
PFAM: SMC domain protein; KEGG: mth:MTH540 intracellular protein transport protein.
 
     0.537
gatA
glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
 
  
 0.509
Nmar_1767
PFAM: heat shock protein DnaJ domain protein; KEGG: cfa:611441 similar to DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4) (DnaJ protein homolog 2) (HSJ-2) (HSDJ).
 
   
 0.481
Nmar_0558
Hypothetical protein; KEGG: tcr:509265.110 trans-sialidase Pfam: BNR PROSITE: GLU_RICH LYS_RICH PRO_RICH.
  
     0.462
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.