STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0116PFAM: glycosyl transferase group 1; KEGG: tpe:Tpen_1746 glycosyl transferase, group 1. (341 aa)    
Predicted Functional Partners:
Nmar_0117
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mja:MJ1061 capsular polysaccharide biosynthesis protein D.
 
  
 0.757
Nmar_0115
PFAM: Radical SAM domain protein; KEGG: afu:AF2316 hypothetical protein.
 
     0.659
Nmar_0145
Hypothetical protein.
  
  
 0.646
Nmar_0119
PFAM: polysaccharide biosynthesis protein; KEGG: mja:MJ1375 SpoVB isolog.
  
  
 0.630
Nmar_0125
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: afu:AF0324 dTDP-glucose 4,6-dehydratase (RfbB).
  
  
 0.625
Nmar_0124
TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: mst:Msp_1102 predicted dTDP-glucose pyrophosphorylase.
  
  
 0.607
Nmar_0168
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: pho:PH1742 putative UDP-glucose 4-epimerase.
 
  
 0.559
Nmar_0123
PFAM: glycosyl transferase family 2; KEGG: mac:MA2170 glycosyltransferase.
 
  
 0.538
Nmar_0062
PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: pfu:PF0058 dolichol monophosphate mannose synthase.
 
 
 0.513
Nmar_0165
PFAM: glycosyl transferase family 2; KEGG: mla:Mlab_0903 hypothetical protein.
 
 
 0.512
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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