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Nmar_0221 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0221" - PFAM: Like-Sm ribonucleoprotein core in Nitrosopumilus maritimus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0221PFAM- Like-Sm ribonucleoprotein core; SMART- Sm-family ribonucleoprotein; KEGG- sso-SSO6454 Small nuclear riboprotein protein (snRNP-2) (78 aa)    
Predicted Functional Partners:
rpl37e
50S ribosomal protein L37e; Binds to the 23S rRNA (55 aa)
 
   
  0.889
Nmar_0218
KEGG- ter-Tery_2528 ribose 5-phosphate isomerase; TIGRFAM- ribose 5-phosphate isomerase; PFAM- Ribose 5-phosphate isomerase (224 aa)
   
        0.845
Nmar_0219
KEGG- pme-NATL1_15531 hypothetical protein (319 aa)
              0.844
rpl7ae
50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C’/D’ sRNAs (128 aa)
 
 
  0.721
Nmar_0222
PFAM- Creatininase; KEGG- mse-Msed_1406 creatininase (240 aa)
              0.687
Nmar_0223
PFAM- formyl transferase domain protein; KEGG- hwa-HQ3129A formyltetrahydrofolate deformylase (289 aa)
              0.676
rrp41
Exosome complex component Rrp41; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3’->5’ exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails (244 aa)
   
 
  0.602
Nmar_0224
PFAM- phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG- pto-PTO1166 phosphoglucomutase/phosphomannomutase; Belongs to the phosphohexose mutase family (449 aa)
 
          0.601
ef1b
Elongation factor 1-beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA (93 aa)
   
        0.540
rrp4
Exosome complex component Rrp4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome (226 aa)
   
   
  0.534
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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