STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0234PFAM: SNARE associated Golgi protein; KEGG: rxy:Rxyl_0514 alkaline phosphatase. (178 aa)    
Predicted Functional Partners:
Nmar_0233
Glyoxalase; KEGG: sus:Acid_5754 glyoxalase.
       0.558
Nmar_0232
PFAM: protein of unknown function DUF101; KEGG: mja:MJ0024 hypothetical protein.
       0.463
Nmar_1262
PFAM: Tubulin/FtsZ GTPase; KEGG: mka:MK0821 ftsZ GTPase involved in cell division.
  
   
 0.451
Nmar_0556
Histidine kinase; PFAM: Extracellular ligand-binding receptor; ATP-binding region ATPase domain protein; KEGG: syn:slr1753 hypothetical protein.
   
 
 0.427
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.