Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Nmar_0331PFAM: ABC-3 protein; KEGG: rca:Rcas_1721 transcriptional regulator, MarR family. (368 aa)    
Predicted Functional Partners:
Nmar_0328
PFAM: periplasmic solute binding protein; KEGG: rca:Rcas_1724 periplasmic solute binding protein.
 
 0.998
Nmar_0329
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3069 ABC transporter related.
 0.996
Nmar_0330
PFAM: ABC-3 protein; KEGG: rrs:RoseRS_3068 ABC-3 protein.
 
  
0.962
Nmar_1654
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK4031 cation ABC transporter, ATP-binding protein.
 0.879
Nmar_1655
PFAM: periplasmic solute binding protein; KEGG: bsu:BG12763 zinc transport system substrate-binding protein.
  
 0.634
Nmar_1128
PFAM: periplasmic solute binding protein; KEGG: dsy:DSY0103 hypothetical protein.
  
  
 0.552
Nmar_0327
Hypothetical protein.
       0.503
Nmar_0572
KEGG: gfo:GFO_2079 conserved hypothetical protein, membrane.
  
  
 0.402
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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