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Nmar_0349 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0349" - PFAM: Like-Sm ribonucleoprotein core in Nitrosopumilus maritimus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0349PFAM- Like-Sm ribonucleoprotein core; SMART- Sm-family ribonucleoprotein; KEGG- iho-Igni_0978 like-Sm ribonucleoprotein, core (80 aa)    
Predicted Functional Partners:
rpoA2
DNA-directed RNA polymerase subunit A’’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1263 aa)
     
 
  0.864
rpoH
DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (83 aa)
   
        0.863
Nmar_0347
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1115 aa)
   
 
  0.857
Nmar_0350
annotation not available (392 aa)
              0.720
nusA
Probable transcription termination protein NusA; Participates in transcription termination (154 aa)
 
          0.639
Nmar_0351
PFAM- TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART- Tetratricopeptide domain protein; KEGG- mmz-MmarC7_1279 periplasmic copper-binding (553 aa)
     
      0.628
Nmar_0164
Putative signal transduction protein with CBS domains; PFAM- CBS domain containing protein; KEGG- mba-Mbar_A0967 hypothetical protein (274 aa)
   
          0.598
Nmar_0352
PFAM- ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG- sai-Saci_0690 50S ribosomal protein L30E (107 aa)
 
   
  0.596
rrp41
Exosome complex component Rrp41; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3’->5’ exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails (244 aa)
   
 
  0.578
Nmar_1391
PFAM- Pre-mRNA processing ribonucleoprotein, binding domain protein; NOSIC domain protein; KEGG- smr-Smar_1256 pre-mRNA processing ribonucleoprotein, binding region (470 aa)
   
 
  0.554
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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