STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0512SMART: regulatory protein AsnC/Lrp family; KEGG: nis:NIS_1776 transcriptional regulator, AsnC/Lrp family. (341 aa)    
Predicted Functional Partners:
Nmar_0515
PFAM: Chlorite dismutase; KEGG: rxy:Rxyl_0747 chlorite dismutase.
 
    
 0.759
Nmar_0511
TIGRFAM: siroheme synthase; KEGG: aae:aq_1237 precorrin-2 oxidase / ferrochelatase.
 
   
 0.750
hemA-2
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
     
 0.607
Nmar_0509
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: bld:BLi02943 delta-aminolevulinic acid dehydratase; RBL00019; Belongs to the ALAD family.
       0.581
Nmar_0508
Hypothetical protein.
       0.484
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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