STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps27aePFAM: Ribosomal protein S27a; KEGG: mbn:Mboo_0241 ribosomal protein S27a; Belongs to the eukaryotic ribosomal protein eS31 family. (57 aa)    
Predicted Functional Partners:
Nmar_0535
Hypothetical protein.
  
 
 0.994
rpl29
PFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
 
 0.832
Nmar_1125
KEGG: sso:SSO5336 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
   0.813
spt4
DNA-directed RNA polymerase subunit E, RpoE2; Stimulates transcription elongation; Belongs to the archaeal Spt4 family.
 
    0.764
rpl3
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
   0.732
rps17e
KEGG: msi:Msm_0833 ribosomal protein S17a; Belongs to the eukaryotic ribosomal protein eS17 family.
  
   0.706
ef1b
Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.
   
    0.704
Nmar_1221
KEGG: tpe:Tpen_0662 protein of unknown function DUF1610.
   
    0.702
rpl37e
Ribosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
   
   0.701
Nmar_1254
PFAM: Ribosomal protein L15e; KEGG: smr:Smar_0852 ribosomal protein L15e.
   
   0.701
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.