STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_1023PFAM: Cupin 2 conserved barrel domain protein; KEGG: ava:Ava_C0104 cupin. (120 aa)    
Predicted Functional Partners:
Nmar_1022
PFAM: Cupin 2 conserved barrel domain protein; KEGG: tma:TM1010 hypothetical protein.
  
 
 0.981
Nmar_1021
Hypothetical protein.
       0.974
Nmar_1024
PFAM: heat shock protein DnaJ domain protein; KEGG: cfa:609460 DnaJ (Hsp40) homolog, subfamily B, member 8.
       0.944
gmd
NAD-dependent epimerase/dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.597
Nmar_0124
TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: mst:Msp_1102 predicted dTDP-glucose pyrophosphorylase.
 
  
 0.570
Nmar_1020
Hypothetical protein.
       0.559
Nmar_0145
Hypothetical protein.
  
  
 0.510
Nmar_0167
Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); KEGG: csc:Csac_1187 bifunctional phosphoglucose/phosphomannose isomerase.
     
 0.495
Nmar_0117
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mja:MJ1061 capsular polysaccharide biosynthesis protein D.
  
  
 0.472
Nmar_0146
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: mbu:Mbur_1591 polysaccharide biosynthesis protein CapD.
  
  
 0.472
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.