STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_1214PFAM: Cobyrinic acid ac-diamide synthase; KEGG: aeh:Mlg_2299 cobyrinic acid a,c-diamide synthase. (330 aa)    
Predicted Functional Partners:
Nmar_1331
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: csc:Csac_2764 ParB-like partition protein.
 
 
 0.892
Nmar_1166
PFAM: ParB domain protein nuclease; KEGG: lic:LIC11353 ParB family protein.
  
 
 0.774
Nmar_1262
PFAM: Tubulin/FtsZ GTPase; KEGG: mka:MK0821 ftsZ GTPase involved in cell division.
  
  
 0.736
srp54
GTP-binding signal recognition particle SRP54 G- domain; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
   
    0.527
Nmar_1632
PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: tvo:TVN0019 DNA topoisomerase I.
     
 0.515
Nmar_1216
Hypothetical protein; KEGG: tva:TVAG_474650 viral A-type inclusion protein, putative Pfam: Drf_FH3 Parathyroid SURF6 bZIP_1 Sec8_exocyst Laminin_I Spc7 BRE1 PspA_IM30 Myosin_tail_1 HALZ Filament DUF904 TolA Rab5-bind TPR_MLP1_2 HR1 ATG16 Prefoldin_2 Osmo_CC Rho_Binding DUF148 Vps51 Crust_neurohorm PROSITE: ASN_RICH.
  
  
 0.497
Nmar_0236
KEGG: pfu:PF0264 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
  
    0.492
Nmar_0522
PFAM: chromosome segregation and condensation protein ScpA; KEGG: pab:PAB2110 putative segregation and condensation protein A.
  
  
 0.489
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
 
 0.447
pcn
Proliferating cell nuclear antigen PcnA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family.
     
 0.401
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.