Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Nmar_1306KEGG: hal:VNG0943C hypothetical protein. (116 aa)    
Predicted Functional Partners:
Nmar_1304
PFAM: CBS domain containing protein; KEGG: mtp:Mthe_0305 putative signal-transduction protein with CBS domains.
       0.686
Nmar_1305
Hypothetical protein.
       0.686
Nmar_1307
PFAM: blue (type 1) copper domain protein; KEGG: cvi:CV_3497 hypothetical protein.
       0.549
Nmar_1303
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: gtn:GTNG_2906 HesB protein.
       0.484
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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