STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_1358PFAM: beta-lactamase domain protein; proteinase inhibitor I1 Kazal; protease inhibitor Kazal-type; KEGG: atc:AGR_pAT_282 hypothetical protein. (479 aa)    
Predicted Functional Partners:
Nmar_1785
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afw:Anae109_2804 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 0.974
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
 
 0.768
Nmar_1275
PFAM: Rhodanese domain protein; KEGG: mkm:Mkms_5751 beta-lactamase domain protein.
  
 
 0.607
Nmar_1359
PFAM: regulatory protein ArsR; KEGG: mhu:Mhun_0040 putative transcriptional regulator.
     
 0.523
Nmar_1008
D-alanine--D-alanine ligase; PFAM: peptidase M20; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; KEGG: amt:Amet_3744 D-alanine--D-alanine ligase domain protein.
 
  
 0.483
Nmar_1548
PFAM: UBA/THIF-type NAD/FAD binding protein; thiamineS protein; MoeZ/MoeB domain protein; KEGG: wsu:WS1006 molybdopterin biosynthesis protein MoeB.
 
   
 0.459
Nmar_0299
PFAM: ribulose-phosphate 3-epimerase; Transketolase domain protein; KEGG: pth:PTH_2750 transketolase, N-terminal subunit.
     
 0.446
Nmar_0205
PFAM: ribonuclease H; KEGG: mbn:Mboo_1556 ribonuclease H.
     
 0.436
rpl13
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
    0.403
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.