STRINGSTRING
Nmar_1623 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_1623" - PFAM: DNA-binding TFAR19-related protein in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_1623PFAM- DNA-binding TFAR19-related protein; KEGG- sai-Saci_1468 hypothetical programmed cell death protein 5; Belongs to the PDCD5 family (93 aa)    
Predicted Functional Partners:
rps19e
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit (150 aa)
   
        0.925
pfdA
Prefoldin subunit alpha; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding (145 aa)
   
      0.919
rpl12
50S ribosomal protein L12; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (105 aa)
 
        0.775
Nmar_1621
Citryl-CoA lyase; PFAM- HpcH/HpaI aldolase; KEGG- mta-Moth_0400 citrate lyase (284 aa)
 
          0.766
Nmar_1622
PFAM- Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG- sus-Acid_2440 alcohol dehydrogenase, zinc-binding domain protein (358 aa)
              0.711
rpl44e
50S ribosomal protein L44e; Binds to the 23S rRNA (93 aa)
   
        0.709
pus10
tRNA pseudouridine synthase Pus10; Responsible for synthesis of pseudouridine from uracil- 54 and uracil-55 in the psi GC loop of transfer RNAs (381 aa)
 
          0.688
spt5
Transcription elongation factor Spt5; Stimulates transcription elongation (152 aa)
 
          0.677
pfdB
Prefoldin subunit beta; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding (129 aa)
   
      0.663
rpl10
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (288 aa)
 
        0.648
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
Server load: low (16%) [HD]