STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO062_26815Unannotated protein; Belongs to the UPF0102 family. (123 aa)    
Predicted Functional Partners:
AO062_26810
Unannotated protein.
  
  
 0.759
AO062_09305
Unannotated protein.
 
    0.719
AO062_26805
Unannotated protein.
     
 0.666
rsmI
Unannotated protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.661
DprA
Unannotated protein.
 
    0.639
AO062_22590
Unannotated protein.
 
  
 0.637
AO062_18375
Unannotated protein.
 
    0.575
gatC
Unannotated protein; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
 
    0.505
TsaB
Unannotated protein.
 
     0.422
raiA
Unannotated protein.
 
     0.419
Your Current Organism:
Variovorax boronicumulans
NCBI taxonomy Id: 436515
Other names: KCTC 22010, NBRC 103145, V. boronicumulans, Variovorax boronicumulans Miwa et al. 2008, strain BAM-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.