STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO062_29250Unannotated protein. (233 aa)    
Predicted Functional Partners:
AO062_29245
Unannotated protein.
 
 
 0.951
lpxC
Unannotated protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
    
 0.897
AO062_29240
Unannotated protein.
 
     0.876
AO062_12610
Unannotated protein.
 
 
 0.814
AO062_00075
Unannotated protein.
 
 
 0.743
AO062_00355
Unannotated protein.
 
 
 0.724
AO062_17115
Unannotated protein.
 
 
 0.712
AO062_21685
Unannotated protein.
 
 
 0.699
priB
Unannotated protein; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.680
AO062_11060
Unannotated protein.
 
 
 0.675
Your Current Organism:
Variovorax boronicumulans
NCBI taxonomy Id: 436515
Other names: KCTC 22010, NBRC 103145, V. boronicumulans, Variovorax boronicumulans Miwa et al. 2008, strain BAM-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.