STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO062_10415Unannotated protein. (640 aa)    
Predicted Functional Partners:
AO062_10420
Unannotated protein; Belongs to the UPF0229 family.
  
 0.998
AO062_10425
Unannotated protein.
 
  
 0.997
AO062_03235
Unannotated protein.
   
    0.777
katE
Unannotated protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
  
 0.774
glgA
Unannotated protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.679
dkgB
Unannotated protein.
   
    0.671
AO062_21835
Unannotated protein.
   
  
 0.615
otsA
Unannotated protein; Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.
   
  
 0.606
AO062_27640
Unannotated protein; Belongs to the Dps family.
   
    0.604
AO062_22950
Unannotated protein.
   
    0.601
Your Current Organism:
Variovorax boronicumulans
NCBI taxonomy Id: 436515
Other names: KCTC 22010, NBRC 103145, V. boronicumulans, Variovorax boronicumulans Miwa et al. 2008, strain BAM-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.